Importing the data | Making a fluxible-friendly dataframe | Importing data from LI7500 tent setup
Package: licoread 0.3.0
licoread: Reads Raw Files from Li-COR Gas Analyzers
Reads raw files from Li-COR gas analyzers and produces a dataframe that can directly be used with 'fluxible' (Gaudard et al 2025 <doi:10.1111/2041-210X.70161>).
Authors:
licoread_0.3.0.tar.gz
licoread_0.3.0.zip(r-4.7-any)licoread_0.3.0.zip(r-4.6-any)licoread_0.3.0.zip(r-4.5-any)
licoread_0.3.0.tgz(r-4.6-any)licoread_0.3.0.tgz(r-4.5-any)
licoread_0.3.0.tar.gz(r-4.7-any)licoread_0.3.0.tar.gz(r-4.6-any)
licoread_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
licoread/json (API)
| # Install 'licoread' in R: |
| install.packages('licoread', repos = c('https://jogaudard.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jogaudard/licoread/issues
Pkgdown/docs site:https://jogaudard.github.io
Last updated from:c1d1cd5a56. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 148 | ||
| source / vignettes | OK | 174 | ||
| linux-release | OK | 174 | ||
| macos-release | OK | 195 | ||
| macos-oldrel | OK | 145 | ||
| windows-devel | OK | 120 | ||
| windows-release | OK | 131 | ||
| windows-oldrel | OK | 118 | ||
| wasm-release | OK | 101 |
Exports:import7500licoreadlicoread_to_fluxiblelist_gases
Dependencies:bitbit64clicliprcpp11crayondplyrgenericsgluehmsjsonlitelifecyclelubridatemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| to read the raw data | data_82z |
| create colnames for data tibble | data_name_82z |
| makes df from 81x files compatible with fluxible | fluxible_81x |
| makes df from 82z files compatible with fluxible | fluxible_82z |
| imports data from li7500 setup | import7500 |
| imports one file from li7500 (old) | import7500_new_oneobs |
| imports one file from li7500 (old) | import7500_old_oneobs |
| reads Li-COR files in a given location | licoread |
| finds out the file type for licoread | licoread_auto |
| selects the focus gas and makes a df to use in fluxible | licoread_to_fluxible |
| lists gases present in the dataset | list_gases |
| read meta data file inside 82z archive | metadata_82z |
| to get a vector of names of a df, matching a regex | names_df |
| reading a single measurement from 81x file | oneobs_81x |
| to read one measurement from the 82z archive | oneobs_82z |
| reads 81x licor file | read_81x_onefile |
| to create a nested tibble with the units of data | units_82z |